MARA results: cerebellum, embryo E16, biol

Sample name: cerebellum, embryo E16, biol_rep2 (E16R2)

Sorted Z-values histogram for the sample cerebellum, embryo E16, biol_rep2 (E16R2)

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
HOX{A6,A7,B6,B7}.p2	5.153	Hoxb6 Hoxa7 Hoxb7 Hoxa6
UGUGCUU	4.090
RFX1..5_RFXANK_RFXAP.p2	3.776	Rfx1 Rfxap Rfx5 Rfxank Rfx4 Rfx3 Rfx2
MAFB.p2	3.692	Mafb
EVI1.p2	3.413	Mecom
REST.p3	3.380	Rest
NKX3-1.p2	3.130	Nkx3-1
KLF12.p2	3.003	Klf12
SMAD1..7,9.p2	2.983	Smad5 Smad1 Smad3 Smad4 Smad2 Smad6 Smad7 Smad9
FOXQ1.p2	2.933	Foxq1
SPZ1.p2	2.915	Spz1
EN1,2.p2	2.817	En1 En2
TBX4,5.p2	2.735	Tbx5 Tbx4
NFIX.p2	2.609	Nfix
GTF2I.p2	2.531	Gtf2i
GLI1..3.p2	2.301	Gli1 Gli2 Gli3
EGR1..3.p2	2.273	Egr3 Egr1 Egr2
ZNF384.p2	2.273	Zfp384
FOXL1.p2	2.261	Foxl1
EWSR1-FLI1.p2	2.151	Fli1 Ewsr1
ZFP161.p2	2.091	Zfp161
HIC1.p2	2.053	Hic1
MYFfamily.p2	1.959	Myod1 Myf6 Myf5 Myog
ALX1.p2	1.919	Alx1
MZF1.p2	1.877	Mzf1
SNAI1..3.p2	1.817	Snai2 Snai1 Snai3
ZEB1.p2	1.769	Zeb1
HOX{A4,D4}.p2	1.746	Hoxa4 Hoxd4
NKX2-1,4.p2	1.700	Nkx2-1 Nkx2-4
AHR_ARNT_ARNT2.p2	1.698	Arnt Ahr Arnt2
TCF4_dimer.p2	1.586	Tcf4
GUGCAAA	1.563
GATA1..3.p2	1.538	Gata1 Gata2 Gata3
ZNF423.p2	1.491	Zfp423
ARID5B.p2	1.434	Arid5b
GCUGGUG	1.397
NKX2-2,8.p2	1.390	Nkx2-2 Nkx2-9
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	1.379	Arnt Max Myc Usf1 Bhlhe40 Arnt2
DMAP1_NCOR{1,2}_SMARC.p2	1.344	Smarca1 Smarcc2 Smarca5 Ncor1 Ncor2 Dmap1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
AGCAGCA	1.329
GUAAACA	1.287
BPTF.p2	1.265	Bptf
AUUGCAC	1.259
UCAAGUA	1.172
ACCCUGU	1.151
GGCAGUG	1.109
ATF6.p2	1.097	Atf6
HSF1,2.p2	1.090	Hsf1 Hsf2
RUNX1..3.p2	1.062	Runx1 Runx3 Runx2
LHX3,4.p2	1.057	Lhx3 Lhx4
ZIC1..3.p2	1.054	Zic1 Zic2 Zic3
AACACUG	1.048
FEV.p2	1.023	Fev
ESRRA.p2	1.008	Esrra
HMX1.p2	1.008	Hmx1
RREB1.p2	0.995	Rreb1
HLF.p2	0.993	Hlf
UUGUUCG	0.964
CAGCAGG	0.898
TFAP2B.p2	0.875	Tcfap2b
POU6F1.p2	0.858	Pou6f1
LEF1_TCF7_TCF7L1,2.p2	0.858	Tcf7 Tcf7l2 Lef1 Tcf7l1
UUGGCAC	0.841
ZBTB6.p2	0.835	Zbtb6
T.p2	0.803	T
NFE2.p2	0.772	Nfe2
RORA.p2	0.755	Rora
ACAUUCA	0.715
SRY.p2	0.699	Sry
JUN.p2	0.697	Jun Jund Junb
NHLH1,2.p2	0.690	Nhlh1 Nhlh2
HBP1_HMGB_SSRP1_UBTF.p2	0.686	Hmgb2 Hmgb3 Ssrp1 Ubtf Hbp1
FOXO1,3,4.p2	0.665	Foxo1 Foxo4 Foxo3
ESR1.p2	0.651	Esr1
FOX{I1,J2}.p2	0.626	Foxi1 Foxj2
TAL1_TCF{3,4,12}.p2	0.600	Tcf3 Tcf4 Tal1 Tcf12	$logo of TAL1_TCF{3,4,12}.p2$
GAGAACU	0.600
GAUUGUC	0.582
ETS1,2.p2	0.580	Ets2 Ets1
GTF2A1,2.p2	0.575	Gtf2a1 Gtf2a2
CRX.p2	0.556	Crx
SOX{8,9,10}.p2	0.504	Sox9 Sox8 Sox10
CTCF.p2	0.503	Ctcf
UGCAUUG	0.499
SREBF1,2.p2	0.489	Srebf1 Srebf2
ZBTB16.p2	0.482	Zbtb16
EOMES.p2	0.468	Eomes
UAUUGCU	0.465
MSX1,2.p2	0.444	Msx1 Msx2
CDX1,2,4.p2	0.440	Cdx1 Cdx2 Cdx4
AAAGUGC	0.411
ZNF238.p2	0.405	Zfp238
HOX{A5,B5}.p2	0.389	Hoxb5 Hoxa5
UCCCUUU	0.372
MAZ.p2	0.369	Maz
UGAAAUG	0.369
LMO2.p2	0.365	Lmo2
ACAGUAC	0.361
GGCUCAG	0.360
HES1.p2	0.350	Hes1
CUCCCAA	0.349
GAUAUGU	0.327
PAX2.p2	0.326	Pax2
STAT1,3.p3	0.325	Stat1 Stat3
POU5F1.p2	0.319	Pou5f1
TP53.p2	0.305	Trp53
AIRE.p2	0.303	Aire
AGCACCA	0.294
UGCAUAG	0.293
HOXA9_MEIS1.p2	0.283	Meis1 Hoxa9
FOX{C1,C2}.p2	0.280	Foxc1 Foxc2
GZF1.p2	0.275	Gzf1
PDX1.p2	0.264	Pdx1
UAAGACU	0.250
CGUGUCU	0.249
AACGGAA	0.245
MYOD1.p2	0.238	Myod1
ZNF148.p2	0.238	Zfp148
AAUACUG	0.232
IKZF1.p2	0.229	Ikzf1
AUGGCAC	0.227
GCAGCAU	0.226
GGACGGA	0.208
GGAGUGU	0.205
ADNP_IRX_SIX_ZHX.p2	0.188	Six5 Zhx1 Irx4 Adnp Zhx3 Zhx2 Irx5 Six2
AAGGUGC	0.183
AUGGCUU	0.175
EBF1.p2	0.171	Ebf1
RXR{A,B,G}.p2	0.170	Rxra Rxrb Rxrg
UAAGACG	0.169
AUGACAC	0.167
ONECUT1,2.p2	0.152	Onecut2 Onecut1
GGAAGAC	0.139
CCAGCAU	0.139
FOSL2.p2	0.116	Fosl2
TFCP2.p2	0.109	Tcfcp2
UUGGCAA	0.079
NKX6-1,2.p2	0.077	Nkx6-1 Nkx6-2
NANOG.p2	0.067	Nanog
PATZ1.p2	0.047	Patz1
PAX8.p2	0.036	Pax8
ACUGCAU	0.023
FOX{D1,D2}.p2	0.013	Foxd2 Foxd1
UUUUUGC	0.010
RXRG_dimer.p3	0.002	Nr1h2 Rxra Pparg Ppara Rxrb Rxrg
POU1F1.p2	0.002	Pou1f1
AAUCUCU	-0.008
ACCCGUA	-0.013
PAX3,7.p2	-0.013	Pax7 Pax3
UGUGCGU	-0.015
TFDP1.p2	-0.030	Tfdp1
UCCAGUU	-0.033
SP1.p2	-0.035	Sp1
HMGA1,2.p2	-0.043	Hmga1 Hmga2
AR.p2	-0.055	Ar
GAGAUGA	-0.078
AGCAGCG	-0.079
HAND1,2.p2	-0.091	Hand1 Hand2
FOXP3.p2	-0.094	Foxp3
VSX1,2.p2	-0.103	Vsx2 Vsx1
AACCGUU	-0.109
DBP.p2	-0.116	Dbp
SOX5.p2	-0.117	Sox5
PAX6.p2	-0.119	Pax6
AGGUAGU	-0.129
AACCUGG	-0.130
UGACCUA	-0.152
GGCAAGA	-0.153
STAT5{A,B}.p2	-0.154	Stat5b Stat5a
NR5A1,2.p2	-0.155	Nr5a1 Nr5a2
AGUGCAA	-0.166
GAUCAGA	-0.180
IKZF2.p2	-0.186	Ikzf2
TGIF1.p2	-0.192	Tgif1
CUACAGU	-0.207
CEBPA,B_DDIT3.p2	-0.244	Ddit3 Cebpa Cebpb
AACAGUC	-0.245
AAGUGCU	-0.250
MTF1.p2	-0.250	Mtf1
UCACAUU	-0.254
NFE2L1.p2	-0.254	Nfe2l1
BACH2.p2	-0.260	Bach2
GFI1B.p2	-0.261	Gfi1b
POU3F1..4.p2	-0.263	Pou3f1 Pou3f3 Pou3f2 Pou3f4
ACUGGCC	-0.277
CGUACCG	-0.280
PPARG.p2	-0.293	Pparg
AGCUGCC	-0.305
UUGGUCC	-0.309
PAX5.p2	-0.317	Pax5
NKX3-2.p2	-0.322	Nkx3-2
AAUGCCC	-0.342
NFE2L2.p2	-0.350	Nfe2l2
AAUCUCA	-0.351
AGUGGUU	-0.375
NFATC1..3.p2	-0.387	Nfatc3 Nfatc2 Nfatc1
ACAGUAU	-0.408
PBX1.p2	-0.414	Pbx1
SPI1.p2	-0.443	Sfpi1
FOXN1.p2	-0.455	Foxn1
TFAP2{A,C}.p2	-0.458	Tcfap2c Tcfap2a
UCACAGU	-0.477
GAGGUAG	-0.482
GUCAGUU	-0.495
CUX2.p2	-0.499	Cux2
PRRX1,2.p2	-0.507	Prrx2 Prrx1
SPIB.p2	-0.509	Spib
ATF2.p2	-0.525	Atf2
IRF1,2,7.p3	-0.550	Irf1 Irf2 Irf7
GCUACAU	-0.577
CAGUGCA	-0.581
CCUUCAU	-0.583
GUAACAG	-0.597
TFAP4.p2	-0.630	Tcfap4
UAAUGCU	-0.632
NR3C1.p2	-0.634	Nr3c1
CACAGUG	-0.644
RXRA_VDR{dimer}.p2	-0.651	Vdr	$logo of RXRA_VDR{dimer}.p2$
CCAGUGU	-0.655
ZNF143.p2	-0.662	Zfp143
HNF1A.p2	-0.671	Hnf1a
KLF4.p3	-0.674	Klf4
AGCUUAU	-0.727
MYBL2.p2	-0.765	Mybl2
NANOG{mouse}.p2	-0.805	Nanog
ATF5_CREB3.p2	-0.817	Atf5 Creb3
FOXD3.p2	-0.844	Foxd3
NR6A1.p2	-0.847	Nr6a1
FOXA2.p3	-0.849	Foxa2
FOS_FOS{B,L1}_JUN{B,D}.p2	-0.862	Fos Junb Fosl1 Jund Fosb	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
XBP1.p3	-0.911	Xbp1
PAX4.p2	-0.944	Pax4
SOX2.p2	-0.958	Sox2
TLX1..3_NFIC{dimer}.p2	-1.008	Tlx1 Tlx3	$logo of TLX1..3_NFIC{dimer}.p2$
CUUUGGU	-1.032
CDC5L.p2	-1.061	Cdc5l
FOX{F1,F2,J1}.p2	-1.078	Foxf2 Foxj1 Foxf1a
SOX17.p2	-1.122	Sox17
PRDM1.p3	-1.125	Prdm1
PITX1..3.p2	-1.131	Pitx2 Pitx3 Pitx1
GATA6.p2	-1.158	Gata6
HIF1A.p2	-1.240	Hif1a
GUAGUGU	-1.278
NFIL3.p2	-1.313	Nfil3
MEF2{A,B,C,D}.p2	-1.362	Mef2a Mef2c Mef2d Mef2b
NFKB1_REL_RELA.p2	-1.401	Rela Rel Nfkb1
GGAAUGU	-1.440
NKX2-3_NKX2-5.p2	-1.440	Nkx2-5 Nkx2-3
EP300.p2	-1.472	Ep300
SRF.p3	-1.646	Srf
NR1H4.p2	-1.708	Nr1h4
MYB.p2	-1.731	Myb
TLX2.p2	-1.751	Tlx2
bHLH_family.p2	-1.805	Arntl Mitf Mxi1 Tcfe3 Clock Olig2 Mxd4 Hey2 Hey1 Heyl Mlxipl Hes6 Mxd3 Arntl2 Id1 Mnt Olig1 Npas2
POU5F1_SOX2{dimer}.p2	-1.810	Pou5f1 Sox2	$logo of POU5F1_SOX2{dimer}.p2$
CREB1.p2	-1.864	Creb1
ATF4.p2	-1.916	Atf4
RBPJ.p2	-1.948	Rbpj
NRF1.p2	-1.967	Nrf1
HNF4A_NR2F1,2.p2	-2.027	Nr2f1 Nr2f2 Hnf4a
CCCUGAG	-2.211
STAT2,4,6.p2	-2.402	Stat2 Stat4 Stat6
TFEB.p2	-2.404	Tcfeb
POU2F1..3.p2	-2.418	Pou2f2 Pou2f1 Pou2f3
ELK1,4_GABP{A,B1}.p3	-2.448	Gabpa Gabpb1 Elk4 Elk1	$logo of ELK1,4_GABP{A,B1}.p3$
EHF.p2	-2.735	Ehf
TEAD1.p2	-3.215	Tead1 Tead2 Tead3 Tead4
ELF1,2,4.p2	-3.334	Elf2 Elf1 Elf4
GFI1.p2	-3.344	Gfi1
YY1.p2	-3.567	Yy1
AAGGCAC	-3.580
TBP.p2	-3.879	Tbp
E2F1..5.p2	-5.352	E2f4 E2f5 E2f2 E2f1 E2f3
NFY{A,B,C}.p2	-5.999	Nfyc Nfyb Nfya

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Sample name: cerebellum, embryo E16, biol_rep2 (E16R2)

Sorted z-values for every WM.